منابع مشابه
Text Mining for Protein Docking
The rapidly growing amount of publicly available information from biomedical research is readily accessible on the Internet, providing a powerful resource for predictive biomolecular modeling. The accumulated data on experimentally determined structures transformed structure prediction of proteins and protein complexes. Instead of exploring the enormous search space, predictive tools can simply...
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Motivation: Although manual curation of proteinprotein interactions from literature resulted in several large databases, many interactions are still available only in manuscripts. Though PubMed does include a search engine, protein-protein interactions remain difficult to find in an automated manner. Results: OPHID Text Miner (OTM) is an information extraction system dedicated to finding specif...
متن کاملCompetitive Intelligence Text Mining: Words Speak
Competitive intelligence (CI) has become one of the major subjects for researchers in recent years. The present research is aimed to achieve a part of the CI by investigating the scientific articles on this field through text mining in three interrelated steps. In the first step, a total of 1143 articles released between 1987 and 2016 were selected by searching the phrase "competitive intellige...
متن کاملProtein Complex Inference enhanced by Text Mining
Protein complexes play a vital role in living organisms as they regulate and execute biological processes. As experimental methods of extracting protein complexes are fraught with difficulties, scientists look towards protein complex prediction. However, protein-protein interaction (PPI) data which are used to predict protein complexes are often noisy and incomplete. As published literature may...
متن کاملProtein Family Databases: Text-mining & Annotation
In recent years the text-mining and bioinformatics communities have worked together to address the problem of finding pertinent information within the vast volume of biomedical literature. In this paper, we focus on a specific bio text-mining issue: the annotation of protein family databases. We describe an evaluation performed on an in-house text-mining tool, we report how successful it was in...
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ژورنال
عنوان ژورنال: PLOS Computational Biology
سال: 2015
ISSN: 1553-7358
DOI: 10.1371/journal.pcbi.1004630